rs32416184 SNP Detail

Summary

• ID
  rs32416184
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191709343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCTGGGA ACACCACTCT CTCTGTGTCG GGTCAGCCCT
  CCCTCACCAG CTAATACTGC TTCAGGCCAA GAGGCTTAGG TGGGTCTCCA TGACAACCGA
  W
  GCTGGCCTGC CTCCAGGTTC TGCAGGGAGC TGTGTCTCAG CTCTGGGGAC CTACACATAC
  TCCACAAACA CCAGCCCAGC TGGGTCCCTC CTCCAGTTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45145485	mCV24805361	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss146512944	ENSMUSSNP4206186	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320196679	CHEV_1_193801263	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs32416184					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191709343 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70525	predicted gene, 70525			1041 bp downstream
Gm70534	predicted gene, 70534			within coordinates
Rd3	retinal degeneration 3			Intron
				mRNA-UTR
Rr426276	regulatory region 426276			within coordinates
Rr426277	regulatory region 426277			2 bp proximal
Rr426278	regulatory region 426278			1905 bp proximal
Tssr10797	transcription start site region 10797			within coordinates
Tssr10798	transcription start site region 10798			11 bp upstream
Tssr10799	transcription start site region 10799			19 bp upstream
Tssr10800	transcription start site region 10800			865 bp upstream
Tssr10801	transcription start site region 10801			902 bp upstream