rs32416031 SNP Detail

Summary

• ID
  rs32416031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172460795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTTGATAGG CTGGGTAATC AACAACAAGC GTGATTATTG
  CAGCGGGGAG TGAAGGCACT AAGGAAGCCT GGAACCAATT AATTGCTCCT GTAGAGAAAA
  Y
  AGCCCAGGGC TGGGCTCTGC TGCTCCCTGG TGGTGCGTTG GAGCTACTGC ATCGTGGGCC
  AGCCGCCTAA CGGCCTGGTC TCTTCATAGT TTTTATACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45144083	mCV27569177	ABI	CRAMUS_MOUSE	f	SNP	C	C		T
ss120013332	PARCsnp_1.20744	PARC_SEQ	INBRED	f	SNP			C	T
ss120015555	PARCsnp_1.10924	PARC_SEQ	INBRED	f	SNP			C	T
ss146197875	ENSMUSSNP6714686	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32416031					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172460795 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	291 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	34 bp downstream
Rr423641	regulatory region 423641	590 bp distal
Rr423642	regulatory region 423642	449 bp distal
Rr423643	regulatory region 423643	172 bp distal
Rr423644	regulatory region 423644	within coordinates
Rr423645	regulatory region 423645	577 bp proximal
Tssr10245	transcription start site region 10245	153 bp downstream
Tssr15247	transcription start site region 15247	419 bp upstream
Tssr15248	transcription start site region 15248	359 bp upstream
Tssr15249	transcription start site region 15249	285 bp upstream