rs32407646 SNP Detail

Summary

• ID
  rs32407646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100588453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG GCAACCCCGT TCTTTCGCCC
  Y
  GCGCCTTCAT CTCACTGTCT GAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46141919	mCV24678666	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
ss145542793	ENSMUSSNP3309335	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C		C
ss322349743	CHEV_7_108087760	CHEVERUD	SCREENING_POP	f	SNP						T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32407646					SNP	T	T	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100588453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	within coordinates
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	Intron
Tssr68182	transcription start site region 68182	330 bp downstream
Tssr73796	transcription start site region 73796	1020 bp upstream
Tssr73797	transcription start site region 73797	955 bp upstream
Tssr73798	transcription start site region 73798	801 bp upstream
Tssr73799	transcription start site region 73799	427 bp upstream
Tssr73800	transcription start site region 73800	356 bp upstream
Tssr73801	transcription start site region 73801	230 bp upstream
Tssr73802	transcription start site region 73802	197 bp upstream
Tssr73803	transcription start site region 73803	121 bp upstream
Tssr73804	transcription start site region 73804	102 bp upstream
Tssr73805	transcription start site region 73805	706 bp downstream