rs32404952 SNP Detail

Summary

• ID
  rs32404952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119593902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAGAAT TATGGTATCT
  AGGCTTGGGA GGATGCATGA GAAGTCACTT AGGGGGCTGG GGAGATGGCT TAGTGGGTAA
  AGTGATCGCC GTGCAAGCAT GAGGACCCAA GTGCAGATCT TCAGCACCCA CATCAAAACA
  GGATGCGTAG CATCAATCTG TAATCTCAGT ACTGCTGGGG ATGCAGACAG GGGGATCTTG
  R
  GACTTCCTGG ATAGCCAATC TAGCCAATAT GGTGAGCTCC AGCTTTCGTG GGAACTGTAT
  ATCAAAAAAA AAAAAGGTGG ACAGTGATAA AGAAGACAAC TGGACATCAA ACTCTGGTCC
  TCACACATGC ACGCATGACC ACACCCATCC AATACACATG CATATATGGC CCCCCTTTCA
  AGTCCATTGA GTTTAGCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45643999	mCV24641881	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147334925	ENSMUSSNP309253	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs32404952					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119593902 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr598641	regulatory region 598641			1789 bp proximal