rs32403163 SNP Detail

Summary

• ID
  rs32403163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134999921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT GGCCGGTTGG GCTGGGCTCC
  R
  CGGACGGCGG CTGCGGCTGT GGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45643712	mCV25366134	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147543282	ENSMUSSNP6395120	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32403163					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134999921 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	mRNA-UTR
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	280 bp upstream
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	932 bp distal
Rr601977	regulatory region 601977	886 bp distal
Rr601978	regulatory region 601978	140 bp distal
Rr601979	regulatory region 601979	182 bp proximal
Rr601980	regulatory region 601980	194 bp proximal
Rr601981	regulatory region 601981	498 bp proximal
Rr601982	regulatory region 601982	1934 bp proximal
Tssr39607	transcription start site region 39607	428 bp downstream
Tssr43972	transcription start site region 43972	1442 bp upstream
Tssr43973	transcription start site region 43973	96 bp downstream
Tssr43974	transcription start site region 43974	124 bp downstream
Tssr43975	transcription start site region 43975	144 bp downstream
Tssr43976	transcription start site region 43976	171 bp downstream
Tssr43977	transcription start site region 43977	188 bp downstream