rs32400565 SNP Detail

Summary

• ID
  rs32400565
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135152165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTACCCA AGAGCAGAGA
  CAGGCCCTGT ACACAAATAA AATGTGCTAA CGAAACACAT TCTGTATATT TAATATCTTC
  AAGTAAAATA TTTAAATAGC TTTTCTTCAA TTCTAGTCTC CAAAACTCCA TGAATAAGTG
  AATGAATAAA AACTGCATTC TTTTTTTTTT TTTTTTGACT TTTCAAGACA GGGTTTCTCT
  K
  TATAGCCCTG GCTGTCCTGG AACTCACTTT ATAGACCAGG CTGGCCTCAA ACTCAGAAAT
  CCGCCTGCCT CTGCCTCCAG TAGTGCTGGG TGGGATTAAA GGCGTGTGCC ACCACTGCCC
  AGCAAAATGT GCATTCTTAG CCAGGTATCG CCCTGACTCA GAGTTCACTA GTTCATTGTT
  CTTCCAGTGT GGTGGGAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45643342	mCV25168331	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss147546741	ENSMUSSNP2203642	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32400565					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135152165 () rs orientation: forward

Symbol	Name	Function Class
Gm69999	predicted gene, 69999	within coordinates
Rcan3	regulator of calcineurin 3	Intron
Rr367746	regulatory region 367746	1839 bp upstream
Rr602028	regulatory region 602028	668 bp proximal
Rr602029	regulatory region 602029	1897 bp proximal