rs32398020 SNP Detail

Summary

• ID
  rs32398020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152412030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCTGAC ATGATTGGGT
  TTTTAAGTTG TGTGTAGTGT GTGTGTGTGT GTGTGTGTGG TGGGGGGGAC TATCCGAGGC
  TTCATCCATG TTTTCTGTAT ACTCCTAGAA AAAGCTTGTG GCGAAGGGGG GCAAAAAAAA
  GAAGCAGGTT TTGAAGTTCA CCCTGGACTG CACTCACCCT GTAGAAGATG GAATCATGGA
  Y
  GCTGCCAATT TTGTAAGTGA CATTCTGCTG GGCCTGTGCA GTGGGGGGGG AGGGGGGTCC
  TGTCCCGCGT TCGTGGCTTG TTGGGCAGTC CCCACTTTTT CATTTAACCA GAGCCAGGGC
  AGATTAAGTA TTTGTTGCTG CATCTCTTGA GATAGAAGTA TAATGGCAGG CTGTGACATA
  CAGGTGACAG AGCTAGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45642872	mCV23462473	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148080855	ENSMUSSNP6665220	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss321434198	CHEV_4_151701682	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32398020					SNP	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152412030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15411	CpG island 15411			982 bp distal
Rpl22	ribosomal protein L22			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr398901	regulatory region 398901			1727 bp downstream
Rr605841	regulatory region 605841			1694 bp distal
Rr605842	regulatory region 605842			868 bp distal
Rr605843	regulatory region 605843			1268 bp distal
Rr605844	regulatory region 605844			1183 bp proximal
Rr605845	regulatory region 605845			1297 bp proximal
Tssr40547	transcription start site region 40547			1697 bp downstream