rs32396083 SNP Detail

Summary

• ID
  rs32396083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150306009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT CTGGGCAAAC ACCTCACAGC
  Y
  CTTTCTGCCT AGTCAAGGAC CTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45643397	mCV23295416	ABI	CRAMUS_MOUSE	f	SNP	T	T					C
ss46712562	NES11000238	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T	C		C	T	T		T
ss321428676	CHEV_4_149595661	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32396083					SNP	T	T	T	T	T	T	C	C	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712562	NES11000238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150306009 () rs orientation: forward

Symbol	Name	Function Class
Rr605229	regulatory region 605229	1748 bp distal
Rr605230	regulatory region 605230	1827 bp distal
Rr605231	regulatory region 605231	1456 bp distal
Rr605232	regulatory region 605232	1211 bp distal
Rr605233	regulatory region 605233	within coordinates
Tssr44739	transcription start site region 44739	831 bp upstream