rs32390851 SNP Detail

Summary

• ID
  rs32390851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135748028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC TTATAAAGAG CACTTGGGTC
  Y
  AGCTGGTATT TCAGGAAGAA ACTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45642254	mCV24785963	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147556003	ENSMUSSNP5262592	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321353735	CHEV_4_135576632	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32390851					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135748028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	229 bp proximal
Eloa	elongin A	Intron
Gm68304	predicted gene, 68304	1284 bp upstream
Rr398604	regulatory region 398604	954 bp upstream
Rr602239	regulatory region 602239	within coordinates
Rr602240	regulatory region 602240	1036 bp proximal
Rr602241	regulatory region 602241	1295 bp proximal
Tssr44023	transcription start site region 44023	912 bp downstream
Tssr44024	transcription start site region 44024	968 bp downstream
Tssr44025	transcription start site region 44025	1005 bp downstream