rs32389950 SNP Detail

Summary

• ID
  rs32389950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136040076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAGAAA GATTTTGGAT
  TTTAGAATGC TTCTTTATAG AACTAGGTTG TTTTAATCAG TAAAAAGGTT CATCTTACAT
  TTTACGTGCT AGTATAGTGG TTTCTTGTGC CAGTTTTGGA TGTTTCTATT TTTTGCTAGT
  TCATCAGAAT TTGAGGCTTG CCTTGAGATA CATCGTTAAG TACAGTCGCG TCTCTGTAGA
  Y
  ATTAGAGGAC TAGTGAGAGC TTTGTGATGA GAAGTCATGC AGCTGTCAGG TCATTCTCAG
  AGTAACACCC TTCACACTCT GCTTCTACTA TTGCCTTCCT CTTTCTCCTC TCATTAACTT
  CAACTAGACA TCAGTGGATG TTCAAATGAA GAGTTGTTTT GTGTCAGGAA ACAGCATTTG
  CACAGTGTTT GATGACTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45642527	mCV22562751	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147565155	ENSMUSSNP5661624	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32389950					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136040076 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15109	CpG island 15109			1006 bp distal
Hnrnpr	heterogeneous nuclear ribonucleoprotein R			Intron
				Noncoding-Transcript-Variant
Rr367756	regulatory region 367756			527 bp downstream
Rr602347	regulatory region 602347			1730 bp distal
Rr602348	regulatory region 602348			731 bp distal
Tssr39700	transcription start site region 39700			1818 bp downstream
Tssr39701	transcription start site region 39701			1781 bp downstream
Tssr39702	transcription start site region 39702			1711 bp downstream