rs32388698 SNP Detail

Summary

• ID
  rs32388698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141234679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTCACCA GAATACTCTA
  CTAAACACAC TCCACCTTTC AACAGCCCTA CACTGCATGA AGCGGAGCAT GCACGAACAC
  TCTGGGCGTG GGGGCGGGAG GTGAGGAGTT GCTGTCCCTC GGGTCTGGCC ACTGACTACC
  AGTTCTGAAG ATAACTTCCA GGAAAATCTG GATACCATAC TTCAAGGAAG CAGAAACCCT
  R
  GTGGATAATA CCATTATCTG ACTTCTACTG GATTCCACCA TGAACAGTAG GGAATTACAA
  ACTAGAAACA TCACCTAATG GCTAGAAAGG CCCACAGTCA TGATTATAGT TTTTGCTCAG
  CACATTTTCT TTGATGCTGT TTTCTGAACC CTGGAGAGGC TCAAGTAATT CATGTAAGGC
  AACGCAGCCC CTCACCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45642083	mCV22902706	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss147739736	ENSMUSSNP1869803	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss321387747	CHEV_4_141063283	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32388698					SNP	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141234679 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603781	regulatory region 603781			47 bp distal
Rr603782	regulatory region 603782			237 bp distal
Rr603783	regulatory region 603783			15 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant