rs32380317 SNP Detail

Summary

• ID
  rs32380317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137525065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC CGGCAGTCCT CGTCTGTAAG
  R
  AGCTGAGAGT TAAGACAGCA GTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45641211	mCV22547100	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147620312	ENSMUSSNP3121960	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss321367544	CHEV_4_137353669	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32380317					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137525065 () rs orientation: forward

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	1370 bp upstream
Cpgi15139	CpG island 15139	1052 bp distal
Rr602724	regulatory region 602724	1381 bp distal
Rr602725	regulatory region 602725	1425 bp distal
Rr602726	regulatory region 602726	880 bp distal
Rr602727	regulatory region 602727	1290 bp distal
Tssr1350	transcription start site region 1350	1458 bp upstream
Tssr44149	transcription start site region 44149	1429 bp upstream
Tssr44150	transcription start site region 44150	1393 bp upstream