rs32372977 SNP Detail

Summary

• ID
  rs32372977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143027738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC TGTGTCTCAC CAGGGTGAGA
  R
  TGAGCCAGCC TGCCCACTCA GCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45640046	mCV25432304	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss147779152	ENSMUSSNP5299907	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss321403834	CHEV_4_142891071	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32372977					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143027738 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	1604 bp upstream
Rr604190	regulatory region 604190	1716 bp distal
Rr604191	regulatory region 604191	1114 bp distal
Rr604192	regulatory region 604192	within coordinates
Rr604193	regulatory region 604193	1400 bp proximal
Tssr44447	transcription start site region 44447	1878 bp upstream
Tssr44448	transcription start site region 44448	1686 bp upstream
Tssr44449	transcription start site region 44449	1657 bp upstream