rs32371004 SNP Detail

Summary

• ID
  rs32371004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129940384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT AAAAATAGAA AGTTCTAGGT
  Y
  TGCTTCTGTC CCAGACCAGC TCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45639384	mCV22593187	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147458142	ENSMUSSNP1773671	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321316721	CHEV_4_129723835	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32371004					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129940384 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1254 bp upstream
Cpgi14918	CpG island 14918	594 bp distal
Cpgi14919	CpG island 14919	732 bp proximal
Gm12963	predicted gene 12963	within coordinates
Rr600419	regulatory region 600419	476 bp distal
Rr600420	regulatory region 600420	930 bp distal
Rr600421	regulatory region 600421	402 bp proximal
Rr600422	regulatory region 600422	1158 bp proximal
Rr600423	regulatory region 600423	1260 bp proximal
Tssr1308	transcription start site region 1308	955 bp upstream
Tssr39217	transcription start site region 39217	769 bp upstream
Tssr39218	transcription start site region 39218	1265 bp upstream
Tssr39219	transcription start site region 39219	1323 bp upstream