rs32365466 SNP Detail

Summary

• ID
  rs32365466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150692476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCAGGCG GTTTTTACAA
  AGTAGCCTTG ACTGCCTGTG TTCCCACCAG CAACTTATAG TTGTGTAGGC CTTCTGCATT
  TTAAATTTAT ATTCTTTAAT TTCCTCAGCC AGGGTTTCCA CCTGGACTAG GTGGCTGGTC
  ATCGTGACCC ATGGTGCCCA GGTTTATTAA TCTGCTCTGG GCGCTTTATT CTTCCATTAC
  Y
  GCTGTTGTAA CTTGTTGAGG AAGCTTGCTG TGGCCTGCAC TATTACACTT ACCTTGAGGT
  CTCAGCTGTT AAAAGACAAC AAGTTCAGGA GTCAGGTGGA GTGGATCAGC CTGGCTTCTG
  GAACCTTTTT ACTATTTGCT GTCTAGCAAT GGGCTGGTTT CTTACTGTCA CTGATCTCTG
  AGGTCTCCTT TTCTAGTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45638767	mCV23452784	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss46716818	NES11011439	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss148055292	ENSMUSSNP5372369	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32365466					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716818	NES11011439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150692476 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				Noncoding-Transcript-Variant
Rr605351	regulatory region 605351			674 bp distal