rs32364339 SNP Detail

Summary

• ID
  rs32364339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151849206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCCCAGT ACCAGATGCT
  CACTGGTGTC TCATAGGAAG GGACAATCAG CCCAAGGGAC AGCAAACTCA CTGACAGCCA
  GTTACATGCA GTCCTGTCAG ACACCTTGGT TCACTGAAGG TCACAGTGCT GCATGTGGTC
  TGACCACGCT CAGAGCTCCT GACTGCCTTC ATCTGAACCT AACCCACAGC CCATCTCACT
  Y
  GGAAGCATGC CTGCATCAAA CTGCAACCAC TCCCCCTCAA GCCTCCCAGA AAGGTGGGAG
  GTTGTGGGGC AGGACAGAGA GGGGCACTGA GGAGGGCAGC TGCTGAGGCA GCAATTTCAT
  CTGTCCAGTC TCCTTACAGT AGAGTTCCTT GAGGTCAGGG ACTGCGTCCC ACCATCCATC
  CCTGAGCCCA GAAGTCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45639310	mCV24231397	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss46732962	NES10994826	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C	T	C	C
ss148077034	ENSMUSSNP5393618	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32364339					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46732962	NES10994826	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151849206 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Rr605638	regulatory region 605638			390 bp distal
Rr605639	regulatory region 605639			759 bp proximal