rs32360558 SNP Detail

Summary

• ID
  rs32360558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129940040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCA GCAAATATCT CTCCTCTTAC
  R
  TGCCAGAGCA CGGCTAAGCA TTCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45639009	mCV22593199	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147458127	ENSMUSSNP5379812	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321316718	CHEV_4_129723491	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32360558					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129940040 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1598 bp upstream
Cpgi14918	CpG island 14918	250 bp distal
Cpgi14919	CpG island 14919	1076 bp proximal
Gm12963	predicted gene 12963	within coordinates
Rr600418	regulatory region 600418	1664 bp distal
Rr600419	regulatory region 600419	132 bp distal
Rr600420	regulatory region 600420	586 bp distal
Rr600421	regulatory region 600421	746 bp proximal
Rr600422	regulatory region 600422	1502 bp proximal
Rr600423	regulatory region 600423	1604 bp proximal
Tssr1308	transcription start site region 1308	1299 bp upstream
Tssr39217	transcription start site region 39217	1113 bp upstream
Tssr39218	transcription start site region 39218	1609 bp upstream
Tssr39219	transcription start site region 39219	1667 bp upstream