rs32347862 SNP Detail

Summary

• ID
  rs32347862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150169820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGAAAATAT GCCAAGTGAA GGAAACCAGA CACTAAAATC AGTGCACCAT ATAATCCCAT
  TTATAGGAAG TATCCAGAGT AGGCATCCAT AGTCACATTA AGAAAATTAG TGGTTGCCAG
  GCTAGGGGGA GAATTTGGGA GTAACGGCTA GTGAACACTT TTTAAAAAAT ATATGTTTAT
  GCAGCTATTT AATTTGTACT TAGATTTCAC ATCGAAATTT CACAGGTTTT AAATGGCCAT
  TTTGTGGTTT TCAACATTAA TATAGAATTA TTTCTTGGAT TTCTGAATAT TTGATATGAA
  R
  TTCTTTTTTT CCCCCTTTTG ATTGAAAATA GATTTTCTCA TTCACAACAT CCTGATCACA
  GTTTTCCCTC CCTCACATCT CCCTGTTCTG CCAACCTCCC CTTCTATCTA GTTCCACTCC
  TTTTCTGTCT CATTTAAAGA GAACAAGATT TACTTATTTG CATTTTATGT ATGCCTGTGC
  GCCTTGTGTG TGTAGTACCA GGAGAGCACA GCAGAGGGCG TCCGATGCCC TGGAACTAGA
  GGTGACCAAC TGTTAGCCCT CGTGGGTCCT GAACTTAAGC CCTCTGCTCT TCATTGCTGG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45637426	mCV24960173	ABI	CRAMUS_MOUSE	f	SNP		G	A				A
ss46711488	NES11007531	PERLEGEN	MM_PANEL2	f	SNP	G			A	A	A	A	A	A	G	A	A	A
ss148046900	ENSMUSSNP5931002	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32347862					SNP	G	G	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711488	NES11007531	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150169820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	1730 bp proximal
Rr398878	regulatory region 398878	1768 bp upstream
Rr605170	regulatory region 605170	123 bp proximal
Rr605171	regulatory region 605171	203 bp proximal
Rr605172	regulatory region 605172	1512 bp proximal