rs32344410 SNP Detail

Summary

• ID
  rs32344410
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134999954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGGGGATG CCGCGTGGGG
  GCGCTTCGGG GTGCGGGGAC GTCAGCCCGC GTCGCTCGGG ACGGTGAGCG CTCACCTTGA
  CGAAGAGCTC GATGAGGGGC TCTTTGTCCT CCTCCTTCAG CCCGTTCAGG GGCATCGACA
  GCGCCATGGC CGGTTGGGCT GGGCTCCGCG GACGGCGGCT GCGGCTGTGG CTCCGGGGCT
  S
  CTGTGGCTGC GGGTTCCCGC CGCTCGCTCA CTCGCTGGCT TGCTCGTTCG CTGGACAGTC
  CCGGCGTCTG GCTGCCCGTG GCCTCAGATC CTCAGCACCG CCTCACGCCT CGCGCGCGAC
  TCTGAGGGGG TTGCGGTCCC GGCCGCTTCA AACCGCTGGG CGGAGCCCTA TGGGCGGGGC
  GTGGGCGGAG CAGTGGCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45637295	mCV25366133	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32344410					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134999954 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	mRNA-UTR
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	247 bp upstream
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	965 bp distal
Rr601977	regulatory region 601977	919 bp distal
Rr601978	regulatory region 601978	173 bp distal
Rr601979	regulatory region 601979	149 bp proximal
Rr601980	regulatory region 601980	161 bp proximal
Rr601981	regulatory region 601981	465 bp proximal
Rr601982	regulatory region 601982	1901 bp proximal
Tssr39607	transcription start site region 39607	461 bp downstream
Tssr43972	transcription start site region 43972	1475 bp upstream
Tssr43973	transcription start site region 43973	63 bp downstream
Tssr43974	transcription start site region 43974	91 bp downstream
Tssr43975	transcription start site region 43975	111 bp downstream
Tssr43976	transcription start site region 43976	138 bp downstream
Tssr43977	transcription start site region 43977	155 bp downstream