rs32341630 SNP Detail

Summary

• ID
  rs32341630
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143929033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTTTCA AACAATAATA
  ACATGTGATA TCTAATAAGA TAGAATTTTC CAAGGAGACG AAGTCTACTT CTTAACCAAA
  AAGTGTTTCC CCTACATGTG AGTCCTTGTA AATAACAGTC CACTGTCCAT GAAGTCCAAC
  TTATTCACCA CCTGTCCTGT TGCAGAAAAC ACTCTCTGAC CCTGGGTTAG GAGACTAACA
  S
  TTCTTCTATC TCCAGTGCTG GGAATGAGTG TGCGCTGTGT ACAGTGCTGG CCACGAGACT
  GCAGCTCTGT GCGTGTAAGA CTTTGCACAG CCTCAGTGAA AGCCACAGTG AGCTGCATCA
  GCCTCTTCCA TGAAGTGAAA TGGACATTCC GGTCGGGACC TACCTTTCCC TCTCCTAGGG
  CACATCACAG AGGGGACGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45807166	mCV25192396	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss144605842	ENSMUSSNP475755	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C	C
ss321708911	CHEV_5_144753084	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32341630					SNP	G	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143929033 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated			Intron
				Noncoding-Transcript-Variant
Tssr54387	transcription start site region 54387			392 bp downstream
Tssr54388	transcription start site region 54388			416 bp downstream
Tssr54389	transcription start site region 54389			495 bp downstream