rs32340141 SNP Detail

Summary

• ID
  rs32340141
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148995524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG TCTGTGTGGT TCAGCCAGTT
  K
  CACAGGTGCT GGGGGACGTA GCTTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45635895	mCV22565454	ABI	CRAMUS_MOUSE	f	SNP	T	T		G
ss46698510	NES10930824	PERLEGEN	MM_PANEL2	f	SNP			T		T		T	G
ss148022819	ENSMUSSNP5404278	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			G
ss321423687	CHEV_4_148285176	CHEVERUD	SCREENING_POP	f	SNP						G			T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32340141					SNP	T	T	T	G	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46698510	NES10930824	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148995524 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr377399	regulatory region 377399	1279 bp upstream
Rr604794	regulatory region 604794	1598 bp distal
Rr604796	regulatory region 604796	1953 bp proximal