rs32335690 SNP Detail

Summary

• ID
  rs32335690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149739116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCAGTGG TTTCCACAAA ACTAAAGTTG
  AACAGGTCAT CTACCAGGGA TGCCACTAAA ATAAACCAAG CAGGATTACC TCACCCCTAC
  ACTTTAGCTC AGGCTAACCT AGATCTTCTT ATAAAGCTCA GATTAAAGGT GTCATCTTAC
  R
  ATCTTCTGGT GGGGAACCCC GATTTGCTGT TGGtggtggt ataatgttgg ggatcaaatc
  tagggccctg cacatgccag ataagttatc aaccactgag gctgcctccc AGACCTTCTT
  CATCTTTATA CACTTTGATT ATATTTTAAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45135792	mCV24643945	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss49510961	NES12852345	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		G		A	A		G	G	A	G		G
ss145700949	ENSMUSSNP3222783	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss320043165	CHEV_1_151710495	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32335690					SNP	A	A	A	A	A	G	A	A	G	G	A	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49510961	NES12852345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149739116 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	172 bp distal