rs32318519 SNP Detail

Summary

• ID
  rs32318519
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129976455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGC TCTGGAGAGA GCCCTCTCCT
  K
  CCTGTTCCTT GTATCCCTAA AGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45633897	mCV25118023	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss147459401	ENSMUSSNP6500234	ENSEMBL	ENSEMBL_Sanger	f	SNP				G
ss321316955	CHEV_4_129759906	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32318519					SNP	G	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129976455 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm70130	predicted gene, 70130			604 bp upstream
Rr600432	regulatory region 600432			615 bp distal
Rr600433	regulatory region 600433			127 bp distal
Rr600434	regulatory region 600434			762 bp proximal