rs32315389 SNP Detail

Summary

• ID
  rs32315389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:147854498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATGCCTA AGGCTTTAGA
  ACTGAGCACT CTACAAACAA CTCTAGAGCC ACGGTGTTCT GCGTTCTCCT TTAGGTGGGT
  ATGTGTATGA CTCAACATAT GCTCCTTTCT CACATACACA CAGAAGCCTG GCCTGTGGGA
  GGCCTCAGAG TTCGGGAAGC CTCTGCCTGG GAGACATCCT GGCACTGGGG TATTCTGGAG
  Y
  TACAAAAGAT GCACGGCTTT CTGTTGGCTT TCTTCCCTAT GTGCGGCCCT GGTGACTGCC
  CAGGGAGAGG AAAGCCCCTC ACTCCCCCAG GACTTGAGGC ACCTTCCTGT TCCTTGGCTG
  CATTTACAAA ATCTCCCTGA ATAATCAAGC GGCTCTCATG ATTTCAGCTT CCCTGGGGAA
  GGCTCTGGCA GTCCCTGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48150509	NES11853439	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32315389					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48150509	NES11853439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:147854498 () rs orientation: forward

Symbol	Name	Function Class
Rr380272	regulatory region 380272	1125 bp downstream
Rr641536	regulatory region 641536	181 bp proximal
Rr641537	regulatory region 641537	476 bp proximal
Rr641538	regulatory region 641538	1971 bp proximal