rs32311200 SNP Detail

Summary

• ID
  rs32311200
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88726064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACAAGCA CCAAGGAGAT CTGCAGCACG TTGGAACTGA
  GGAGTTAGTG TGGCTTCTGA GGAGGATGGG AGTTTTCACT TCAGTTGGGA CCAGCCTGGT
  S
  TCTGCCTGTG GTCAGAGAAC AACTTGTTCT AGCCCTGTTA CTTGATCAGG ACTAGGGTTT
  ACATAGGGAA GGACTTTGTC TCTAGACTTC TCTCCTCTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45632815	mCV25216812	ABI	CRAMUS_MOUSE	f	SNP		G	C						G
ss63332829	NES17507968	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	G	G	C	G	C	G		C	G	C	C		G
ss146940348	ENSMUSSNP6398207	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						G
ss321203827	CHEV_4_88453731	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32311200					SNP	G	G	C	G	G	G	G	C	G	C	G	G	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63332829	NES17507968	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88726064 () rs orientation: forward

Symbol	Name	Function Class
Gm13288	predicted gene 13288	mRNA-UTR
Rr595118	regulatory region 595118	1810 bp distal
Rr595119	regulatory region 595119	1664 bp distal
Rr595120	regulatory region 595120	1322 bp distal