rs32309469 SNP Detail

Summary

• ID
  rs32309469
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137525010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG GTCATAATGG CAAAAGCCAT
  K
  GGGGCGGTGA ATAAATGAAA CTTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45632747	mCV22547111	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	G
ss147620302	ENSMUSSNP5401991	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
ss321367542	CHEV_4_137353614	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32309469					SNP	T	T	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137525010 () rs orientation: forward

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	1315 bp upstream
Cpgi15139	CpG island 15139	997 bp distal
Rr602724	regulatory region 602724	1326 bp distal
Rr602725	regulatory region 602725	1370 bp distal
Rr602726	regulatory region 602726	825 bp distal
Rr602727	regulatory region 602727	1235 bp distal
Tssr1350	transcription start site region 1350	1403 bp upstream
Tssr44149	transcription start site region 44149	1374 bp upstream
Tssr44150	transcription start site region 44150	1338 bp upstream