rs32308860 SNP Detail

Summary

• ID
  rs32308860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133850398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT AAGCTGGGCG TGGTGGCGCA
  Y
  GCCTTTAATC CCGGCACTCG GGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45632450	mCV24805398	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147518444	ENSMUSSNP6681588	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321345437	CHEV_4_133679002	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32308860					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133850398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367738	regulatory region 367738			1717 bp downstream
Rr367739	regulatory region 367739			1175 bp upstream
Rr370577	regulatory region 370577			1062 bp downstream
Rr601567	regulatory region 601567			1155 bp distal
Rr601568	regulatory region 601568			1268 bp distal
Rr601569	regulatory region 601569			918 bp distal
Rr601570	regulatory region 601570			301 bp distal
Rr601571	regulatory region 601571			734 bp proximal
Rr601572	regulatory region 601572			961 bp proximal
Rr601573	regulatory region 601573			1027 bp proximal
Rr601574	regulatory region 601574			1510 bp proximal
Tssr39532	transcription start site region 39532			1252 bp downstream
Tssr39533	transcription start site region 39533			1227 bp downstream
Tssr39534	transcription start site region 39534			1423 bp upstream
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant