rs32308424 SNP Detail

Summary

• ID
  rs32308424
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:27680084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTGTCCAGT ATTCTGACAG GGTCTCTCTA GTAACACTGT CCACAGATGC GTGCCCCCGT
  GAGTTTTCAA TACAGAAACA CGTTTAACAA TACTTTAAAA AGACTATCCC CAACCCCTTC
  TCCATCTCCA ACAATTCTAT GGGGGGGGGT CTTCTATTTT TCTTTGGTTT CTGTCAAGGT
  TTACTAATAG TCTTAAAAGT GGATCTATGT CTTTCTTTTA GCAAATAGTT AAGAGGTATA
  CCAAAAGGTT GTTTCCATTT CAGCTGGAGT AAGTGACTTT AAGGCCACTG TGTCGGTTTT
  K
  TTTGTTTGTT TGTTTGTTTG TTTTTTGTTT GTTGTTTTGT TTTTGGTTTT GGTTTTTGGT
  TTTTTTTTTT TTTTTTTTTT TTTGTCTTGT TTTTGTTTTT GATCTGTTTG GAAAACAGAA
  CCAGCGAAGA GGATCTCCTA TGCTCCTAAG TCCTCCCTCA GCAGTTATAT TCGAAAGGGA
  AACGTTTTCC ACAATCTTAT CCTTGAATCT CACTTTGTCC TGCAAACCTA CAGCAGACCC
  CACAGACTGA AACAAACGAA AGGTCCCTCT CTCTCCTTGG GCTCAGCGCA CTGACACGCC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss39388356	mCV24795615	ABI	CRAMUS_MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs32308424					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:27680084 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C130098B18Rik	RIKEN cDNA C130098B18 gene			within coordinates
Gm62492	predicted gene, 62492			1687 bp upstream
Otulinl	OTU deubiquitinase with linear linkage specificity like			Intron
				Noncoding-Transcript-Variant
Rr390488	regulatory region 390488			253 bp downstream
Rr500168	regulatory region 500168			611 bp proximal
Rr500169	regulatory region 500169			1504 bp proximal
Rr500170	regulatory region 500170			1698 bp proximal
Tssr130895	transcription start site region 130895			1666 bp upstream
Tssr133874	transcription start site region 133874			119 bp downstream
Tssr133875	transcription start site region 133875			1486 bp downstream
Tssr133876	transcription start site region 133876			1500 bp downstream
Tssr133877	transcription start site region 133877			1575 bp downstream