rs32299881 SNP Detail

Summary

• ID
  rs32299881
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118978591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCGCCTCCT TTACACTGGG CATCTTACGT GTGTTTATGA CGTTGGTGGT GAGTTCTATT
  TTACAGACTC AGGCTGATGA AATGACCTGT GGGTAAGGTC ATGTACTGGT GAATGGTGGC
  ATCTCAGCCA AGCTCTTTGT TTCCATAGCC TCAGGCTGCC TTCCTTTCCT GACCCACTCT
  CTTGTCCTTT AACAATTCCC ACTTTCACAG GGCTCATGGA GTAGAGGTAG TCAGCCCTCC
  TGTCAGACAT GCTCACTACC CAGGCTGAGG AGGCTAGACA GTGAGTGTGA GAGTGCCTCT
  M
  TCGGGACCAG GGCACCAGAC TAGAATCAGA GCTGGGCTTC TTCCAAGTAG GCGGAGCTTG
  GCTGTAGGGG CCACGCCCGA TGCTGGGGAG CAAGTCCCTA GGAAGGCTTG GCTGCTGAGT
  CATGCTGAGC TGCAGCAGCC CTGATGGGAT TTTTCCAGGA TCTAACATGG CAACTGTGAG
  CCCATGCTTG GAACAAATCC CAAACCTTGT TTTTACTAAG TGCTTAGACA GCTCCCACCT
  AAGTGTGTCC TTTGCAGCCA GCTGTTTTGG GGGAATCTGC AGATGTAAAG TCTATACAAC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45631113	mCV22645993	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32299881					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118978591 () rs orientation: forward

Symbol	Name	Function Class
Rr377076	regulatory region 377076	within coordinates
Rr598496	regulatory region 598496	1486 bp distal
Rr598497	regulatory region 598497	within coordinates
Rr598498	regulatory region 598498	1995 bp proximal
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	Intron
Tssr38701	transcription start site region 38701	935 bp downstream