rs32298013 SNP Detail

Summary

• ID
  rs32298013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172316451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCAAAGG AACATGTGGC
  TGAGCTGGGC TTGTGCCTGG GTTCTTTGGG GCTGCCAAGC AAGCACCTTA CTCACGTAGA
  CTGCACTGCT AGGGATGTTT CAGGCTGTCA GGGTGCCGGG TTCCCTCAGA GGAGGGTCCT
  GAGGGACTGG GCGAGCACAT CTCAGTCAGC CTAGTGGTCT GCTATGGACC ATGCTGGGAA
  Y
  GAAAGGTCTT TTTTGTGCTG TGGTGTGTGG CTTTGTGGGG CTGCATGTGG TCAGTCAGCT
  GGGGCGTAGA GGGGCTGGGC TGGGCTGGGG AGGCTGCTGA CGCTGCTGCC TGCCTGGGTT
  GGACTCTGGC CACTCTAAGG CGCTTAGGCC GCTGATAATA GCTCTGGGAG ATTACAGGTT
  TTGGTAGATG AGGTATGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45130716	mCV23003502	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss146193529	ENSMUSSNP5381892	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
ss320125684	CHEV_1_174419015	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32298013					SNP	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172316451 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			1629 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423586	regulatory region 423586			1991 bp distal
Rr423587	regulatory region 423587			within coordinates
Rr423588	regulatory region 423588			803 bp proximal
Rr423589	regulatory region 423589			1683 bp proximal
Rr423590	regulatory region 423590			1862 bp proximal