rs32292665 SNP Detail

Summary

• ID
  rs32292665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108000533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAAACAT TCTGGGGAGC TGGAGAGGTG GCTCAGTGGT
  TAAGAGCACT GACTGCTCTT CTAAAGGTCC TGAGTTCAAA TCCCAGGAAC CACATGGTGG
  Y
  TCACAACCAT CTGTATTGAG AGCTGACACT GCCCTCTTCT GGTATGTCTG AAGACAGCTA
  CAGTGTACTT ACATATAATA ATAAGTAAAT CTTTAAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45630464	mCV24670873	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147185453	ENSMUSSNP3509795	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32292665					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108000533 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr376981	regulatory region 376981			1304 bp upstream
Rr597136	regulatory region 597136			26 bp proximal
Scp2	sterol carrier protein 2, liver			Intron
				Noncoding-Transcript-Variant
Tssr42716	transcription start site region 42716			1616 bp downstream
Tssr42717	transcription start site region 42717			1650 bp downstream