rs32291467 SNP Detail

Summary

• ID
  rs32291467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129943349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT ATCCCTGCAG TCCCTGGTAC
  R
  TGGGTCCCAA GAAGGCTGTC ACTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45630452	mCV22593140	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss147458251	ENSMUSSNP1803358	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs32291467					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129943349 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Cpgi14919	CpG island 14919			1454 bp distal
Gm12963	predicted gene 12963			1134 bp upstream
Rr600421	regulatory region 600421			1808 bp distal
Rr600422	regulatory region 600422			1706 bp distal
Rr600423	regulatory region 600423			972 bp distal
Rr600424	regulatory region 600424			537 bp proximal
Tssr1308	transcription start site region 1308			1957 bp downstream
Tssr39218	transcription start site region 39218			1655 bp downstream
Tssr39219	transcription start site region 39219			1627 bp downstream
Tssr39220	transcription start site region 39220			1154 bp upstream
Tssr39221	transcription start site region 39221			1185 bp upstream