rs32281544 SNP Detail

Summary

• ID
  rs32281544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149684435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GCATCCTGAG TGCTGGGATT
  W
  AAAGGATGTG CTACTGTGCT GGACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45629485	mCV24957063	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss148036699	ENSMUSSNP1294537	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss321426254	CHEV_4_148974087	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32281544					SNP	A	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149684435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clstn1	calsyntenin 1			Intron
				Noncoding-Transcript-Variant
Rr604981	regulatory region 604981			1853 bp distal
Rr604982	regulatory region 604982			1424 bp proximal