rs32278222 SNP Detail

Summary

• ID
  rs32278222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGC TTTGCTCCTT TGTGGGAAGG
  R
  GATGAATTTC AGTATAAATC TGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45628646	mCV24937903	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss147994741	ENSMUSSNP6867299	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss321417751	CHEV_4_147536627	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32278222					SNP	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246975 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			1474 bp distal
Cpgi15296	CpG island 15296			1446 bp proximal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Rr604608	regulatory region 604608			1887 bp distal
Rr604609	regulatory region 604609			757 bp distal
Rr604610	regulatory region 604610			1892 bp proximal
Tssr40264	transcription start site region 40264			1888 bp downstream
Tssr40265	transcription start site region 40265			1866 bp downstream
Tssr40266	transcription start site region 40266			1838 bp downstream
Tssr40267	transcription start site region 40267			1699 bp upstream