rs32270903 SNP Detail

Summary

• ID
  rs32270903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133850483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT CTACAAAATG AGTTCCAGGA
  Y
  AGCCAGGGCT ACACAGAGAA ACCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45628229	mCV24805387	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147518454	ENSMUSSNP6740251	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32270903					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133850483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367738	regulatory region 367738			1802 bp downstream
Rr367739	regulatory region 367739			1090 bp upstream
Rr370577	regulatory region 370577			1147 bp downstream
Rr601567	regulatory region 601567			1240 bp distal
Rr601568	regulatory region 601568			1353 bp distal
Rr601569	regulatory region 601569			1003 bp distal
Rr601570	regulatory region 601570			386 bp distal
Rr601571	regulatory region 601571			649 bp proximal
Rr601572	regulatory region 601572			876 bp proximal
Rr601573	regulatory region 601573			942 bp proximal
Rr601574	regulatory region 601574			1425 bp proximal
Tssr39532	transcription start site region 39532			1337 bp downstream
Tssr39533	transcription start site region 39533			1312 bp downstream
Tssr39534	transcription start site region 39534			1338 bp upstream
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant