rs32260279 SNP Detail

Summary

• ID
  rs32260279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150652713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTCTCT TTTCTGGTGA
  ATACATTGTA TGTTGCTGGG CACTAACCCT ACATTTGATG CCACAGTCTG GCACTCCACC
  CTCCAAACTA TCTCCTACCA ACCATCTCCC CTTCTCAAAG CTCCCTCTAA CCCTACAAAC
  ACTGCTCCTC CCATTGGTAA CCTGCCTTGG TGAGAAGATG TTCTGGCCTC CCTTGGTGCA
  Y
  AGTTGCGATG CCCCTTGCTG CTTTCAGGTA GTACCCTGGA GTGCTCTGTG ATGACTGTAT
  GCACTTACTT TACCTGCAAA AAGCTAGTCA CAGTTTAAGC ATATCCTGTC AAGGTTTTTC
  AAAGTCCCTC CCAGTGCTAG ATGTACAGTA ACTCACCAGA GTGAATTCAG GGCCTCCTCT
  CCTACAGTGC TGTGCCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45627026	mCV23182744	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32260279					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150652713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	798 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1774 bp downstream
Rr605335	regulatory region 605335	1621 bp distal
Rr605336	regulatory region 605336	within coordinates
Rr605337	regulatory region 605337	278 bp proximal
Rr605338	regulatory region 605338	1979 bp proximal
Tssr40415	transcription start site region 40415	1762 bp downstream
Tssr40416	transcription start site region 40416	1672 bp downstream
Tssr40417	transcription start site region 40417	560 bp upstream
Tssr40418	transcription start site region 40418	961 bp upstream
Tssr40419	transcription start site region 40419	993 bp upstream
Tssr40420	transcription start site region 40420	1228 bp upstream
Tssr40421	transcription start site region 40421	1282 bp upstream
Tssr40422	transcription start site region 40422	1944 bp upstream
Tssr44743	transcription start site region 44743	1380 bp upstream
Tssr44744	transcription start site region 44744	444 bp downstream
Tssr44745	transcription start site region 44745	1609 bp downstream
Tssr44746	transcription start site region 44746	1810 bp downstream
Tssr44747	transcription start site region 44747	1820 bp downstream
Tssr44748	transcription start site region 44748	1858 bp downstream