rs32258615 SNP Detail

Summary

• ID
  rs32258615
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136039726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTTGTT GAATCCCCCC
  TCTTGATCCG AAGGATTTAT TTCCTAGAGT CTATTTTACC TTTTTTTTTT TTTTAGGTTA
  AAGTTGACAA AATCTGAACA TTTTAAAAGT TTTGATATCA ATGGTAGTCA TAAATGTCTT
  GTGCTTAATA CATAACTTGT CATTTTGCTT CACGCATACT TTTCAAAAAC ACTCCACCTT
  W
  ACAGATGTTC ATCGAACTTC TCAGTTAATT TCCTCTCCTG TAACATAGTA TTCATAGGTG
  CAGTGCTATG AAGGTCTTGT TACAGAACTT TTGAGTTGTG ATCTTCGTAT AGTGTTTGTG
  GGGGAGGAAT GGGAAAGCAC AAATGTATGT CCACAGAAAG ATTTTGGATT TTAGAATGCT
  TCTTTATAGA ACTAGGTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45626599	mCV22562752	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss147565150	ENSMUSSNP1125521	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32258615					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136039726 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15109	CpG island 15109			656 bp distal
Hnrnpr	heterogeneous nuclear ribonucleoprotein R			Intron
				Noncoding-Transcript-Variant
Rr367756	regulatory region 367756			177 bp downstream
Rr602347	regulatory region 602347			1380 bp distal
Rr602348	regulatory region 602348			381 bp distal
Tssr39700	transcription start site region 39700			1468 bp downstream
Tssr39701	transcription start site region 39701			1431 bp downstream
Tssr39702	transcription start site region 39702			1361 bp downstream