rs32257204 SNP Detail

Summary

• ID
  rs32257204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109265457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGAAAGCT CCGGAGCTTG GCTGACTACC TTTCTGCGCA
  GCCCTGTCCG AACACCACCC TTCAGTATTA GAAGCGTGGT TTTCAGGAGA AAAGGCAGAC
  R
  TGGAACAAGG CTTCCATCCA CAAACCCAGA CTTGCTGGCT GAAAGCCAGA CTCGTCCCTC
  TTGCCTATAT ACCACAGCTG TGCCTGAGTC CCTGGAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45625696	mCV23909887	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss321254102	CHEV_4_109080865	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32257204					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109265457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14573	CpG island 14573			358 bp distal
Rr597313	regulatory region 597313			1140 bp distal
Rr597314	regulatory region 597314			within coordinates
Tssr38345	transcription start site region 38345			1497 bp downstream
Tssr38346	transcription start site region 38346			1141 bp downstream
Tssr38347	transcription start site region 38347			1095 bp downstream
Tssr42761	transcription start site region 42761			1998 bp upstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant