rs32238075 SNP Detail

Summary

• ID
  rs32238075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149680661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGAGTA TGTGGGCTCT
  CTTAGCAAAG GGGTGATTAG GACACATCGT CAGTACTTCA AATATAAAAT AAATATCCTG
  TGGCTACAGA GCTGGCCCAG CAGTTAAGAC ATGTTGCTGC TCTTGCAGAG GACCTGAGTT
  GGTTCCTAGC ATTCTTACCA GGCAGCTCAC AACCACCTGT AATTCTCGCT TCAAGGGGTC
  Y
  GAGGCTCTCC CCTGACCTCC TCAGGGCCAG CACTCCTGTG GCGTGCACAT ACACTTAAAT
  AAATTGACCT GTGGTTAGGA GCGTGGCTTA ATGCTAGAGC CCGTGCTCTG TCAATCTGTG
  TGCTTAATGC TAGAGCCCGT GCTCTTTCTG TGTGCTTGCT CTTTCTGTGT GCTTGCTCTC
  TCCTATTGCA AAAGCCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45624687	mCV24956864	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148036664	ENSMUSSNP5919015	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs32238075					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149680661 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clstn1	calsyntenin 1			Intron
				Noncoding-Transcript-Variant
Rr604980	regulatory region 604980			751 bp distal
Rr604981	regulatory region 604981			1667 bp proximal