rs32234703 SNP Detail

Summary

• ID
  rs32234703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152573932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGGGCG TGTGGCGACA
  CCTCTCCTCT TACGGCGAAA AGGAGGTGGA GAGAGAGAGA ACTCCTATCC TCGTGGGCTT
  ACCCTCCCTG TCCTTTTTCC ACCCGGACTT TTTAGTCTGT GGGACAGCAT CACCCGCATC
  CCCAGTGGGA CATCTCACTG TAGCGAGTCC TGTTCCGACT CACCCAGGGC TGTGCCTCGA
  Y
  GGTCCACATG TCTCTCACGC TATGAGGATG ACAGTCAAGA GCGACTGTCA CAGGTGGTGA
  AACTAAGACT CAGGAAAATG GCTGCCCACA TGGAAGACAG CAGAGCGTGG ACTCCGACCG
  ATGCCTCTGC ACCCCAGGCT TGGCAGTAGC ATGGCACCGA TTGGGTCCAT GTTCCCCAGG
  GAGCCTCTTG GCTGCCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45623998	mCV25088384	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148082845	ENSMUSSNP5382688	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32234703					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152573932 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp4	nephronophthisis 4 (juvenile) homolog (human)			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr605890	regulatory region 605890			1847 bp proximal
Rr605891	regulatory region 605891			1956 bp proximal
Tssr40559	transcription start site region 40559			1143 bp downstream