rs32230808 SNP Detail

Summary

• ID
  rs32230808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44071091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGG AAATGGGGTC TTATAAAATG
  Y
  CCAACCCAGA GTCCACCTGC CAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45622572	mCV22820178	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss321100038	CHEV_4_44083963	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32230808					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44071091 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14207	CpG island 14207			978 bp proximal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase			Intron
				Noncoding-Transcript-Variant
Rr591148	regulatory region 591148			1962 bp distal
Rr591149	regulatory region 591149			310 bp proximal
Rr591150	regulatory region 591150			1677 bp proximal
Rr591151	regulatory region 591151			1885 bp proximal
Tssr41482	transcription start site region 41482			1441 bp downstream
Tssr41483	transcription start site region 41483			1487 bp downstream
Tssr41484	transcription start site region 41484			1621 bp downstream
Tssr41485	transcription start site region 41485			1925 bp downstream