rs32228564 SNP Detail

Summary

• ID
  rs32228564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117126177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGAGAAAG AAAGGAAAAG GAAAAGGAAA AGGAAAAAGA
  AAAAGCCAGG CATATTGGCA CACACTTAAA CTCCCAGCTC TGGGGAGGCA GATATAGGCA
  R
  GTGCCCGGGG CTCACTGAGC CTACTTAGTG AGCCTCAGGC CTGAGAGAGA GGACCTGTCT
  CAAGCAGCAA AGTGACAGTG TCTGAGGAGC TGTGCCCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45622987	mCV25302134	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs32228564					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117126177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14657	CpG island 14657	698 bp distal
Rr398416	regulatory region 398416	1278 bp upstream
Rr598100	regulatory region 598100	1218 bp distal
Rr598101	regulatory region 598101	1480 bp distal
Rr598102	regulatory region 598102	764 bp distal
Rr598103	regulatory region 598103	1150 bp proximal
Rr598104	regulatory region 598104	1201 bp proximal
Rr598105	regulatory region 598105	1443 bp proximal
Tmem53	transmembrane protein 53	398 bp downstream