rs32228057 SNP Detail

Summary

• ID
  rs32228057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155968875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAGAATGA TGGTTATCAT TTGTATACTG TCTGCTCCTT
  TTGTTTAGGC TGCTCTCCCT TTGGAGTTTG AGGTCTTTAA TTCTTCTTGC CTATGTTCCT
  R
  GGGCTCTGAA GGGCTTAACT TTAGATCTTT TCACCGTAGG CCTTCCATTT TGTGTTATAG
  TTCATACTGG ATTTTTTTTC CCCCTTGAGG TAGCACAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45622473	mCV24241518	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A	G
ss46785009	NES10992269	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		G	A		A	A	A		G
ss148119410	ENSMUSSNP1337449	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss321443608	CHEV_4_155258527	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32228057					SNP	G	G	G	G	G	A	G	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46785009	NES10992269	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155968875 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606605	regulatory region 606605			490 bp distal