rs32224791 SNP Detail

Summary

• ID
  rs32224791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150279889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGTGCAAGC AGTTCTGATT CTGATCTTCT AAAACCATGC TGTGGCGTTT TCTGATGTGT
  CTATTTGTGG GCTTGTTTAG GTGTTCGCCC GTGTTTAACC TGCAGAATGT GCCTCCGTGG
  CAGCACAGAG CAGTTAATGT CGCTGCTAAG ATTGATGCTT CTAGATTTTA AATTTTACTT
  ATTTATCTAT TTATGTTATA TGAAAACAAC TGGGTATTTC ATTTTGCTTA TAACTTTATC
  CAGCTTTTAC GTAAAGTTTT TGAGAATTAG AGTCCTGTCT ACTTTGAATT TGTTTTTTAG
  Y
  CTTATTTGCT TCTATTTTCT ATGTATGTGT GTTTTTATCT GCACATATGT CGGTGTACCA
  TGTGCAAGCC TGGTGCCCTC AGAGGCCAGT GGGTCTCCTG GAACTGGTGG TGAACTACCA
  TGGGAGTGCT GAGCCTAGAA CCTGGGGCCT CGGGAAGAAC AGCCAGGACT CTTAATCACT
  GAGCATCTCG CCAGCCCGGA TTCCTGTCAA CTTCAAATGA CCTATGCCTA AGTCCATCGT
  GTGGACTTTT CGAGAATCTG GCTGGCTGGT GTCACCTGGC CCATTAGACC AGCCTGTGTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45622240	mCV24961241	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32224791					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150279889 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			1213 bp distal
Rr605220	regulatory region 605220			1299 bp distal
Tssr40386	transcription start site region 40386			662 bp upstream
Tssr40387	transcription start site region 40387			1878 bp upstream
Tssr44728	transcription start site region 44728			1657 bp upstream
Tssr44729	transcription start site region 44729			647 bp downstream
Tssr44730	transcription start site region 44730			677 bp downstream
Tssr44731	transcription start site region 44731			710 bp downstream
Tssr44732	transcription start site region 44732			1923 bp downstream
Tssr44733	transcription start site region 44733			1930 bp downstream