rs32223809 SNP Detail

Summary

• ID
  rs32223809
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148994959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT CCCAGGTTCC ACATCAGCTA
  S
  GACAGTTGAT CAACCTTGAT TGGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45622421	mCV22565442	ABI	CRAMUS_MOUSE	f	SNP	G		C
ss46698507	NES10930823	PERLEGEN	MM_PANEL2	f	SNP		G		G		G	C	C		C
ss148022794	ENSMUSSNP2726873	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss321423681	CHEV_4_148284611	CHEVERUD	SCREENING_POP	f	SNP					C				G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32223809					SNP	G	G	C	G	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46698507	NES10930823	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148994959 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr377399	regulatory region 377399	1844 bp upstream
Rr604794	regulatory region 604794	1033 bp distal