rs32221017 SNP Detail

Summary

• ID
  rs32221017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144919707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCAGCCTC AAAGGAAGGC AGATATTTAC TTGTCTATGC
  AAGACATAAT TATAATCAGG GACAGTTAAA AAAAAATCAA TTAACTCTTC AGGGTGATGA
  Y
  CTACACCTTT AATTCCAGCA CAAGGGAAGA AGAGGTAGGC AATCTCTGAA TGGAAGGACG
  ATCATCTCAT TTACATAGGG GTTCCAGGCC AGCCAGAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45622002	mCV22764417	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss321412772	CHEV_4_144783040	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs32221017					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144919707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15267	CpG island 15267			1187 bp proximal
Rr398672	regulatory region 398672			1780 bp upstream
Rr604318	regulatory region 604318			within coordinates
Rr604319	regulatory region 604319			332 bp proximal
Rr604320	regulatory region 604320			1211 bp proximal
Rr604321	regulatory region 604321			1858 bp proximal
Rr604322	regulatory region 604322			1950 bp proximal
Tssr44481	transcription start site region 44481			1816 bp downstream
Tssr44482	transcription start site region 44482			1830 bp downstream
Tssr44483	transcription start site region 44483			1862 bp downstream
Vps13d	vacuolar protein sorting 13D			Intron
				Noncoding-Transcript-Variant