rs32219311 SNP Detail

Summary

• ID
  rs32219311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150133347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCGCCCT GAAACTAGGC
  AGCGAGCGAG ACAAGGGACG CTGCGCAAAC TCTGAGCTCT CGCTGGGGGA AGAGCGGACC
  CGGGCAGAGC AGAGGCGGAG GTGCGGGACC CAATGTCTGC AACCTGCGCG ATAGGACCCC
  GGCCTGGCTG CTCGGTGCCC TTACGGTGTC CGGCCACCTC CCCCTACCCC TCCCTATTCC
  Y
  CGCCTGGCCA ACGCATAGAC CAGCGTGACC CGGGCGTCCG CAGTGCTCGC TGGCACCGCC
  CTCACGCGCC CGGCCTTTCG CCCACCTTGA CCCACTTTTT CTTCCCAGGT GACAGAGATG
  TGGCCATACC GACCATTTAA AGCGATTCCA ACTCCGGCGA AGCCTGGCTG GAAAGACGCG
  GCTTCCATCC CGGCAGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45621429	mCV23448464	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss148045880	ENSMUSSNP328441	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32219311					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150133347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	within coordinates
Gm13067	predicted gene 13067	within coordinates
Gm69230	predicted gene, 69230	within coordinates
Rr377414	regulatory region 377414	within coordinates
Rr605155	regulatory region 605155	641 bp distal
Rr605156	regulatory region 605156	within coordinates
Rr605157	regulatory region 605157	213 bp proximal
Tssr40363	transcription start site region 40363	646 bp downstream
Tssr40364	transcription start site region 40364	598 bp downstream
Tssr40365	transcription start site region 40365	283 bp upstream