rs32218405 SNP Detail

Summary

• ID
  rs32218405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109137198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT CATTACTTAG TACCATTACT
  Y
  TTTTAGTTCC CACAACCCAC CTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45621411	mCV24667087	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147195868	ENSMUSSNP1738410	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss321253762	CHEV_4_108952606	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32218405					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109137198 () rs orientation: forward

Symbol	Name	Function Class
Eps15	epidermal growth factor receptor pathway substrate 15	267 bp upstream
Gm40225	predicted gene, 40225	within coordinates
Rr398389	regulatory region 398389	8 bp upstream
Rr597299	regulatory region 597299	within coordinates
Rr597300	regulatory region 597300	131 bp proximal
Rr597301	regulatory region 597301	422 bp proximal
Rr597302	regulatory region 597302	444 bp proximal
Rr597303	regulatory region 597303	769 bp proximal
Tssr38334	transcription start site region 38334	265 bp upstream
Tssr38335	transcription start site region 38335	315 bp upstream
Tssr38336	transcription start site region 38336	364 bp upstream