rs32209100 SNP Detail

Summary

• ID
  rs32209100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156442693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT ATGAGTGCTA TTACTATGAT
  R
  CTGTGGTTCA GGTTTTTTTG AGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45119814	mCV23342426	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145800277	ENSMUSSNP4732085	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320072521	CHEV_1_158545254	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32209100					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156442693 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase			Intron
				mRNA-UTR
Rr396424	regulatory region 396424			379 bp downstream
Rr396425	regulatory region 396425			484 bp upstream
Rr421201	regulatory region 421201			483 bp distal
Rr421202	regulatory region 421202			280 bp distal
Rr421203	regulatory region 421203			23 bp proximal
Rr421204	regulatory region 421204			517 bp proximal
Rr421205	regulatory region 421205			1865 bp proximal
Tssr9572	transcription start site region 9572			695 bp upstream
Tssr9573	transcription start site region 9573			754 bp upstream
Tssr9574	transcription start site region 9574			780 bp upstream