rs32202943 SNP Detail

Summary

• ID
  rs32202943
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151052998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTTACTT TTACGGTGAT
  CTGATCTGGC CTATCGCGCT GGTGAAAACC TATTACAATC TTCTAGGAAA AGCATAATTT
  ACCAAAACAG ACTGAAGAAA GGAAATGCAT AAATAAAACT GCCGTTGAGA AAGCTGAGGA
  AGAAGTTACA ATTCCTGCCA TGTTAGTCCA GAGGCCCAGG TAGTCCTTGA CAGCCATGGG
  W
  GCAGTTATTC CAATATGTTC CAACTTCCGT GGGGTACAGG CAGGCCTGGA AAGTAGAGGG
  AGCAGTCTAC TTACTGCCAT GTTAATCTAA TTGCTTCTGA AATTATTTTT TTTTTAAAGT
  TTTATTTTAT GCGTCTCTTT GCGTGTGTAC ACATGCACCC GTGTGCTGGT GCCCATGCAG
  GCCAGAAGAG GGCATCAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45619658	mCV24225881	ABI	CRAMUS_MOUSE	f	SNP		A	T
ss46720366	NES11010159	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32202943					SNP	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46720366	NES11010159	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151052998 () rs orientation: forward

Symbol	Name	Function Class
Gm30120	predicted gene, 30120	within coordinates
Gm68496	predicted gene, 68496	979 bp upstream
Rr605476	regulatory region 605476	1866 bp distal
Rr605477	regulatory region 605477	1546 bp distal
Rr605478	regulatory region 605478	1778 bp distal
Rr605479	regulatory region 605479	178 bp proximal
Rr605480	regulatory region 605480	495 bp proximal